PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G064100.1
Common NameB456_008G064100, LOC105763238
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family DBB
Protein Properties Length: 224aa    MW: 25004.6 Da    PI: 8.4398
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G064100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.98.5e-08433534
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                         C+ +e+ +++ fC  ++  lC+ C ++ H
  Gorai.008G064100.1  4 LCDACESAPAIVFCAADEAALCRACDEKVH 33
                        6**************************998 PP

2zf-B_box27.46.8e-095291237
            zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                        + ++C+ +e+ ++ ++Ce +++ lC +C +  H g    H
  Gorai.008G064100.1 52 DVPRCDICENAPAFFYCEIDGSSLCLQCDMVVHVGgkrtH 91
                        5799***************************996655567 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.352147IPR000315B-box-type zinc finger
CDDcd000217.85E-7345No hitNo description
PfamPF006433.6E-6441IPR000315B-box-type zinc finger
SMARTSM003361.8E-7447IPR000315B-box-type zinc finger
SMARTSM003363.1E-115196IPR000315B-box-type zinc finger
PROSITE profilePS501198.8595196IPR000315B-box-type zinc finger
PfamPF006437.0E-75291IPR000315B-box-type zinc finger
CDDcd000214.09E-75484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MRILCDACES APAIVFCAAD EAALCRACDE KVHMCNKLAS RHVRVGLANP SDVPRCDICE  60
NAPAFFYCEI DGSSLCLQCD MVVHVGGKRT HGRNLLLRQR VEFPGDKPAH IDETRRGQNH  120
PRKTPVGEKQ QNHKVSPVHG ADAAAAAVGH LETDTKMIDL NMKPHRIHGQ ASNNQEDGPN  180
NQTLMQVMYG KHYRCGIPIS AYRWAKKLIR IRRSRWSTDD DKW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012436832.11e-168PREDICTED: B-box zinc finger protein 18-like isoform X1
SwissprotC0SVM57e-77BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A0D2T1F41e-168A0A0D2T1F4_G
STRINGVIT_04s0023g03030.t012e-94(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21682469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.17e-78DBB family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]